package jalview.util;
-import java.util.Vector;
-import java.util.Hashtable;
+import java.util.*;
+
+import jalview.datamodel.*;
public class DBRefUtils
{
/**
* Utilities for handling DBRef objects and their collections.
*/
+ /**
+ *
+ * @param dbrefs Vector of DBRef objects to search
+ * @param sources String[] array of source DBRef IDs to retrieve
+ * @return Vector
+ */
public static Vector selectRefs(java.util.Vector dbrefs, String[] sources) {
if (dbrefs==null)
return null;
// there are probable memory leaks in the hashtable!
return null;
}
+
+ /**
+ * isDasCoordinateSystem
+ *
+ * @param string String
+ * @param dBRefEntry DBRefEntry
+ * @return boolean true if Source DBRefEntry is compatible with DAS CoordinateSystem name
+ */
+ public static Hashtable DasCoordinateSystemsLookup = null;
+ public static boolean isDasCoordinateSystem(String string,
+ DBRefEntry dBRefEntry)
+ {
+ if (DasCoordinateSystemsLookup==null)
+ { // Initialise
+ DasCoordinateSystemsLookup = new Hashtable();
+ DasCoordinateSystemsLookup.put("pdbresnum",
+ jalview.datamodel.DBRefSource.PDB);
+ DasCoordinateSystemsLookup.put("uniprot",
+ jalview.datamodel.DBRefSource.UNIPROT);
+ }
+
+ String coordsys = (String) DasCoordinateSystemsLookup.get(string.toLowerCase());
+ if (coordsys!=null)
+ return coordsys.equals(dBRefEntry.getSource());
+ return false;
}
+}