JAL-3725 helper methods for computing mapped feature range overlap

[jalview.git] / src / jalview / util / LinkedIdentityHashSet.java

diff --git a/src/jalview/util/LinkedIdentityHashSet.java b/src/jalview/util/LinkedIdentityHashSet.java
index 5cdbeb1..7f109ec 100644 (file)
--- a/src/jalview/util/LinkedIdentityHashSet.java
+++ b/src/jalview/util/LinkedIdentityHashSet.java
@@ -34,7 +34,7 @@ import java.util.LinkedHashMap;
  */
 public class LinkedIdentityHashSet<E> extends AbstractSet<E>
 {
-  LinkedHashMap<IdentityWrapper, IdentityWrapper> set = new LinkedHashMap<IdentityWrapper, IdentityWrapper>();
+  LinkedHashMap<IdentityWrapper, IdentityWrapper> set = new LinkedHashMap<>();
 
   static class IdentityWrapper
   {
@@ -51,7 +51,7 @@ public class LinkedIdentityHashSet<E> extends AbstractSet<E>
     @Override
     public boolean equals(Object obj)
     {
-      return this.obj == obj;
+      return this.obj == ((IdentityWrapper) obj).obj;
     }
 
     @Override
@@ -65,7 +65,34 @@ public class LinkedIdentityHashSet<E> extends AbstractSet<E>
   public boolean add(E e)
   {
     IdentityWrapper el = (new IdentityWrapper(e, set.size()));
-    return set.putIfAbsent(el, el) == null;
+    // Map.putIfAbsent() from Java 8
+    // return set.putIfAbsent(el, el) == null;
+    return putIfAbsent(el, el) == null;
+  }
+
+  /**
+   * If the specified key is not already associated with a value (or is mapped
+   * to null) associates it with the given value and returns null, else returns
+   * the current value.
+   * 
+   * Method added for Java 7 (can remove for Java 8)
+   * 
+   * @param key
+   * @param value
+   * @return
+   * @see https
+   *      ://docs.oracle.com/javase/8/docs/api/java/util/Map.html#putIfAbsent
+   *      -K-V-
+   */
+  private IdentityWrapper putIfAbsent(IdentityWrapper key,
+          IdentityWrapper value)
+  {
+    IdentityWrapper v = set.get(key);
+    if (v == null)
+    {
+      v = set.put(key, value);
+    }
+    return v;
   }
 
   @Override
@@ -87,6 +114,13 @@ public class LinkedIdentityHashSet<E> extends AbstractSet<E>
       {
         return (E) se.next().obj;
       }
+
+      @Override
+      public void remove()
+      {
+        // Java 8 default behaviour
+        throw new UnsupportedOperationException();
+      }
     };
   }