JAL-4036 removing the query field code from the dropdown indexes

[jalview.git] / src / jalview / util / Platform.java

diff --git a/src/jalview/util/Platform.java b/src/jalview/util/Platform.java
index ef509df..573e2d5 100644 (file)
--- a/src/jalview/util/Platform.java
+++ b/src/jalview/util/Platform.java
@@ -52,7 +52,7 @@ public class Platform
           false;
 
   private static Boolean isNoJSMac = null, isNoJSWin = null, isMac = null,
-          isWin = null;
+          isWin = null, isLinux = null;
 
   private static Boolean isHeadless = null;
 
@@ -81,6 +81,19 @@ public class Platform
   }
 
   /**
+   * added to check LaF for Linux
+   * 
+   * @return
+   */
+  public static boolean isLinux()
+  {
+    return (isLinux == null
+            ? (isLinux = (System.getProperty("os.name")
+                    .indexOf("Linux") >= 0))
+            : isLinux);
+  }
+
+  /**
    * 
    * @return true if HTML5 JavaScript
    */
@@ -337,7 +350,7 @@ public class Platform
 
   public static byte[] getFileBytes(File f)
   {
-    return /** @j2sNative f && swingjs.JSUtil.getFileBytes$java_io_File(f) || */
+    return /** @j2sNative f && swingjs.JSUtil.getFileAsBytes$O(f) || */
     null;
   }
 
@@ -510,8 +523,7 @@ public class Platform
 
   public static Object parseJSON(String json) throws ParseException
   {
-    return (isJS() ? JSON.parse(json)
-            : new JSONParser().parse(json));
+    return (isJS() ? JSON.parse(json) : new JSONParser().parse(json));
   }
 
   public static Object parseJSON(Reader r)
@@ -549,17 +561,16 @@ public class Platform
   public static void streamToFile(InputStream is, File outFile)
           throws IOException
   {
+    if (isJS() && /**
+                   * @j2sNative outFile.setBytes$O && outFile.setBytes$O(is) &&
+                   */
+            true)
+    {
+      return;
+    }
     FileOutputStream fio = new FileOutputStream(outFile);
     try
     {
-      if (isJS()
-              && /**
-                  * @j2sNative outFile.setBytes$O && outFile.setBytes$O(is) &&
-                  */
-              true)
-      {
-        return;
-      }
       byte[] bb = new byte[32 * 1024];
       int l;
       while ((l = is.read(bb)) > 0)
@@ -589,8 +600,8 @@ public class Platform
     if (isJS())
     {
       System.out.println(
-            "Platform adding known access-control-allow-origin * for domain "
-                    + domain);
+              "Platform adding known access-control-allow-origin * for domain "
+                      + domain);
       /**
        * @j2sNative
        * 
@@ -602,23 +613,31 @@ public class Platform
 
   public static void getURLCommandArguments()
   {
-
-    /**
-     * Retrieve the first query field as command arguments to Jalview. Include
-     * only if prior to "?j2s" or "&j2s" or "#". Assign the applet's __Info.args
-     * element to this value.
-     * 
-     * @j2sNative var a =
-     *            decodeURI((document.location.href.replace("&","?").split("?j2s")[0]
-     *            + "?").split("?")[1].split("#")[0]); a &&
-     *            (J2S.thisApplet.__Info.args = a.split(" "));
-     */
-
+    try
+    {
+      /**
+       * Retrieve the first query field as command arguments to Jalview. Include
+       * only if prior to "?j2s" or "&j2s" or "#". Assign the applet's
+       * __Info.args element to this value.
+       * 
+       * @j2sNative var a =
+       *            decodeURI((document.location.href.replace("&","?").split("?j2s")[0]
+       *            + "?").split("?")[1].split("#")[0]); a &&
+       *            (System.out.println("URL arguments detected were "+a)) &&
+       *            (J2S.thisApplet.__Info.urlargs = a.split(" "));
+       *            (!J2S.thisApplet.__Info.args || J2S.thisApplet.__Info.args
+       *            == "" || J2S.thisApplet.__Info.args == "??") &&
+       *            (J2S.thisApplet.__Info.args = a) && (System.out.println("URL
+       *            arguments were passed to J2S main."));
+       */
+    } catch (Throwable t)
+    {
+    }
   }
 
   /**
-   * A (case sensitive) file path comparator that ignores the difference between /
-   * and \
+   * A (case sensitive) file path comparator that ignores the difference between
+   * / and \
    * 
    * @param path1
    * @param path2