import jalview.javascript.json.JSON;
+import java.awt.Color;
import java.awt.Toolkit;
import java.awt.event.MouseEvent;
import java.io.BufferedReader;
import java.io.File;
+import java.io.FileOutputStream;
import java.io.FileReader;
import java.io.IOException;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.io.Reader;
+import java.net.MalformedURLException;
import java.net.URL;
import java.util.Properties;
+import java.util.logging.ConsoleHandler;
+import java.util.logging.Level;
+import java.util.logging.Logger;
import javax.swing.SwingUtilities;
import org.json.simple.parser.JSONParser;
import org.json.simple.parser.ParseException;
+import com.stevesoft.pat.Regex;
+
/**
* System platform information used by Applet and Application
*
private static Boolean isNoJSMac = null, isNoJSWin = null, isMac = null,
isWin = null;
- private static Boolean isHeadless = null;
+ // private static Boolean isHeadless = null;
/**
* added to group mouse events into Windows and nonWindows (mac, unix, linux)
return (isNoJSWin == null ? (isNoJSWin = !isJS && isWin()) : isNoJSWin);
}
- /**
- *
- * @return true if we are running in non-interactive no UI mode
- */
- public static boolean isHeadless()
- {
- if (isHeadless == null)
- {
- isHeadless = "true".equals(System.getProperty("java.awt.headless"));
- }
- return isHeadless;
- }
+ // /**
+ // *
+ // * @return true if we are running in non-interactive no UI mode
+ // */
+ // public static boolean isHeadless()
+ // {
+ // if (isHeadless == null)
+ // {
+ // isHeadless = "true".equals(System.getProperty("java.awt.headless"));
+ // }
+ // return isHeadless;
+ // }
/**
*
public static long time, mark, set, duration;
+ /**
+ * typical usage:
+ *
+ * Platform.timeCheck(null, Platform.TIME_MARK);
+ *
+ * ...
+ *
+ * Platform.timeCheck("some message", Platform.TIME_MARK);
+ *
+ * @param msg
+ * @param mode
+ */
public static void timeCheck(String msg, int mode)
{
long t = System.currentTimeMillis();
}
}
- public static void cacheFileData(String path, byte[] data)
+ public static void cacheFileData(String path, Object data)
{
- if (!isJS())
+ if (!isJS() || data == null)
{
return;
}
*/
}
+ public static void cacheFileData(File file)
+ {
+ byte[] data;
+ if (!isJS() || (data = Platform.getFileBytes(file)) == null)
+ {
+ return;
+ }
+ cacheFileData(file.toString(), data);
+ }
+
public static byte[] getFileBytes(File f)
{
- return /** @j2sNative f && f._bytes || */
+ // TODO temporary doubling of 秘bytes and _bytes;
+ // just remove _bytes when new transpiler has been installed
+ return /** @j2sNative f && (f.秘bytes || f._bytes) || */
null;
}
public static byte[] getFileAsBytes(String fileStr)
{
+ byte[] bytes = null;
// BH 2018 hack for no support for access-origin
- return /** @j2sNative swingjs.JSUtil.getFileAsBytes$O(fileStr) || */
- null;
+ /**
+ * @j2sNative bytes = swingjs.JSUtil.getFileAsBytes$O(fileStr)
+ */
+ cacheFileData(fileStr, bytes);
+ return bytes;
}
- public static String getFileAsString(String data)
+ @SuppressWarnings("unused")
+ public static String getFileAsString(String url)
{
- return /** @j2sNative swingjs.JSUtil.getFileAsString$S(data) || */
- null;
+ String ret = null;
+ /**
+ * @j2sNative
+ *
+ * ret = swingjs.JSUtil.getFileAsString$S(url);
+ *
+ *
+ */
+ cacheFileData(url, ret);
+ return ret;
}
public static boolean setFileBytes(File f, String urlstring)
}
@SuppressWarnings("unused")
byte[] bytes = getFileAsBytes(urlstring);
+ // TODO temporary doubling of 秘bytes and _bytes;
+ // just remove _bytes when new transpiler has been installed
/**
- * @j2sNative f._bytes = bytes;
+ * @j2sNative f.秘bytes = f._bytes = bytes;
*/
return true;
}
* @param url
* @return true if window has been opened
*/
- public static boolean openURL(String url)
+ public static boolean openURL(String url) throws IOException
{
if (!isJS())
{
+ BrowserLauncher.openURL(url);
return false;
}
/**
@SuppressWarnings("unused")
ThreadGroup g = Thread.currentThread().getThreadGroup();
/**
- * @j2sNative return g.html5Applet._uniqueId;
+ * @j2sNative return g.秘html5Applet._uniqueId;
*
*/
return null;
*/
public static void readInfoProperties(String prefix, Properties p)
{
+ if (!isJS())
+ {
+ return;
+ }
@SuppressWarnings("unused")
ThreadGroup g = Thread.currentThread().getThreadGroup();
String id = getUniqueAppletID();
String key = "", value = "";
/**
- * @j2sNative var info = g.html5Applet.__Info || {}; for (var key in info) {
- * if (key.indexOf(prefix) == 0) { value = "" + info[key];
+ * @j2sNative var info = g.秘html5Applet.__Info || {}; for (var key in info)
+ * { if (key.indexOf(prefix) == 0) { value = "" + info[key];
*/
System.out.println(
"Platform id=" + id + " reading Info." + key + " = " + value);
- p.put(id + "_" + key, value);
+ p.put(key, value);
/**
* @j2sNative
{
if (isJS())
{
- return JSON.getJSONReader(response);
+ return JSON.parse(response);
}
BufferedReader br = null;
try
{
br = new BufferedReader(new InputStreamReader(response, "UTF-8"));
- return parseJSON(br);
+ return new JSONParser().parse(br);
} finally
{
if (br != null)
}
+ /**
+ * Dump the input stream to an output file.
+ *
+ * @param is
+ * @param outFile
+ * @throws IOException
+ * if the file cannot be created or there is a problem reading the
+ * input stream.
+ */
+ public static void streamToFile(InputStream is, File outFile)
+ throws IOException
+ {
+ FileOutputStream fio = new FileOutputStream(outFile);
+ try
+ {
+ if (isJS()
+ && /**
+ * @j2sNative outFile.setBytes$O && outFile.setBytes$O(is) &&
+ */
+ true)
+ {
+ return;
+ }
+ byte[] bb = new byte[32 * 1024];
+ int l;
+ while ((l = is.read(bb)) > 0)
+ {
+ fio.write(bb, 0, l);
+ }
+ } finally
+ {
+ fio.close();
+ }
+ }
+
+ /**
+ * Add a known domain that implements access-control-allow-origin:*
+ *
+ * These should be reviewed periodically.
+ *
+ * @param domain
+ * for a service that is not allowing ajax
+ *
+ * @author hansonr@stolaf.edu
+ *
+ */
+ public static void addJ2SDirectDatabaseCall(String domain)
+ {
+
+ if (isJS())
+ {
+ System.out.println(
+ "Platform adding known access-control-allow-origin * for domain "
+ + domain);
+ /**
+ * @j2sNative
+ *
+ * J2S.addDirectDatabaseCall(domain);
+ */
+ }
+
+ }
+
+ public static void getURLCommandArguments()
+ {
+
+ /**
+ * Retrieve the first query field as command arguments to Jalview. Include
+ * only if prior to "?j2s" or "&j2s" or "#". Assign the applet's __Info.args
+ * element to this value.
+ *
+ * @j2sNative var a =
+ * decodeURI((document.location.href.replace("&","?").split("?j2s")[0]
+ * + "?").split("?")[1].split("#")[0]); a &&
+ * (J2S.thisApplet.__Info.args = a.split(" "));
+ */
+
+ }
+
+ public static URL getDocumentBase()
+ {
+ try
+ {
+ if (isJS())
+ {
+ @SuppressWarnings("unused")
+ Object g = Thread.currentThread().getThreadGroup();
+ return new URL(/**
+ * @j2sNative g.秘html5Applet._appletPanel.appletDocumentBase
+ * ||
+ */
+ "");
+ }
+ } catch (MalformedURLException e)
+ {
+ }
+ return null;
+ }
+
+ public static URL getCodeBase()
+ {
+ try
+ {
+ if (isJS())
+ {
+ @SuppressWarnings("unused")
+ Object g = Thread.currentThread().getThreadGroup();
+ return new URL(/**
+ * @j2sNative g.秘html5Applet._appletPanel.appletCodeBase
+ * ||
+ */
+ "");
+ }
+ } catch (MalformedURLException e)
+ {
+ }
+ return null;
+ }
+
+ /**
+ * load a resource -- probably a core file -- if and only if a particular
+ * class has not been instantialized. We use a String here because if we used
+ * a .class object, that reference itself would simply load the class, and we
+ * want the core package to include that as well.
+ *
+ * @param resourcePath
+ * @param className
+ */
+ public static void loadStaticResource(Object resourcePath,
+ String className)
+ {
+ /**
+ *
+ * @j2sNative if (!swingjs.JSUtil.isClassLoaded$S(className))
+ * swingjs.JSUtil.loadStaticResource$S(resourcePath);
+ */
+ }
+
+ public static void ensureRegex()
+ {
+ loadStaticResource("core/core_stevesoft.z.js",
+ "com.stevesoft.pat.Regex");
+ }
+
+ public static Regex newRegex(String searchString, String replaceString)
+ {
+ ensureRegex();
+ return (replaceString == null ? new Regex(searchString)
+ : new Regex(searchString, replaceString));
+ }
+
+ public static Regex newRegexPerl(String code)
+ {
+ ensureRegex();
+ return Regex.perlCode(code);
+ }
+
+ /**
+ * @param c
+ */
+ public static Color getColorFromName(String name)
+ {
+ if (name == null)
+ {
+ return null;
+ }
+ /**
+ * @j2sNative
+ *
+ * return swingjs.JSUtil.getColorFromName$S(name);
+ */
+ {
+ // or make a static map; or use reflection on the field name
+ switch (name.toLowerCase())
+ {
+ case "black":
+ return Color.black;
+ case "blue":
+ return Color.blue;
+ case "cyan":
+ return Color.cyan;
+ case "darkgray":
+ return Color.darkGray;
+ case "gray":
+ return Color.gray;
+ case "green":
+ return Color.green;
+ case "lightgray":
+ return Color.lightGray;
+ case "magenta":
+ return Color.magenta;
+ case "orange":
+ return Color.orange;
+ case "pink":
+ return Color.pink;
+ case "red":
+ return Color.red;
+ case "white":
+ return Color.white;
+ case "yellow":
+ return Color.yellow;
+ default:
+ return null;
+ }
+
+ }
+ }
+
+ /**
+ * Initialize Java debug logging. A representative sample -- adapt as desired.
+ */
+ public static void startJavaLogging()
+ {
+ /**
+ * @j2sIgnore
+ */
+ {
+ logClass("java.awt.EventDispatchThread", "java.awt.EventQueue",
+ "java.awt.Component", "java.awt.focus.Component",
+ "java.awt.event.Component",
+ "java.awt.focus.DefaultKeyboardFocusManager");
+ }
+ }
+
+ /**
+ * Initiate Java logging for a given class. Only for Java, not JavaScript;
+ * Allows debugging of complex event processing.
+ *
+ * @param className
+ */
+ public static void logClass(String... classNames)
+ {
+ /**
+ * @j2sIgnore
+ *
+ *
+ */
+ {
+ Logger rootLogger = Logger.getLogger("");
+ rootLogger.setLevel(Level.ALL);
+ ConsoleHandler consoleHandler = new ConsoleHandler();
+ consoleHandler.setLevel(Level.ALL);
+ for (int i = classNames.length; --i >= 0;)
+ {
+ Logger logger = Logger.getLogger(classNames[i]);
+ logger.setLevel(Level.ALL);
+ logger.addHandler(consoleHandler);
+ }
+ }
+ }
+
+ /**
+ * Set the "app" property of the HTML5 applet object, for example,
+ * "testApplet.app", to point to the Jalview instance. This will be the object
+ * that page developers use that is similar to the original Java applet object
+ * that was accessed via LiveConnect.
+ *
+ * @param j
+ */
+ public static void setAppClass(Object j)
+ {
+ if (!isJS())
+ {
+ return;
+ }
+ @SuppressWarnings("unused")
+ Thread t = Thread.currentThread();
+ /**
+ * Set up "testApplet.app" to be this instance
+ *
+ * @j2sNative
+ *
+ * try {self[t.name].app = j}catch(e){}
+ */
+ }
+
+ public final static String EMBEDDED_DIM = "dim";
+
+ /**
+ *
+ * If this frame Is this frame embedded in a web page, return a known type.
+ *
+ * @param frame
+ * a JFrame or JInternalFrame
+ * @param type
+ * @return null if frame is not embedded.
+ */
+ public static Object getEmbeddedAttribute(Object frame, String type)
+ {
+ if (!isJS())
+ {
+ return null;
+ }
+ return (/** swingjs@j2sNative || frame.ui.getEmbedded(type) */
+ null);
+ }
+
+ public static void stackTrace()
+ {
+ try
+ {
+ throw new NullPointerException();
+ } catch (Exception e)
+ {
+ e.printStackTrace();
+ }
+
+ }
+
}