/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.util;
+/**
+ * A class to perform efficient sorting of arrays of objects based on arrays of
+ * scores or other attributes. For example, residues by frequency.
+ *
+ * @author gmcarstairs
+ *
+ */
public class QuickSort
{
+ /**
+ * Sorts both arrays with respect to ascending order of the items in the first
+ * array.
+ *
+ * @param arr
+ * @param s
+ */
public static void sort(int[] arr, Object[] s)
{
sort(arr, 0, arr.length - 1, s);
}
+ /**
+ * Sorts both arrays with respect to ascending order of the items in the first
+ * array.
+ *
+ * @param arr
+ * @param s
+ */
public static void sort(float[] arr, Object[] s)
{
sort(arr, 0, arr.length - 1, s);
}
+ /**
+ * Sorts both arrays with respect to ascending order of the items in the first
+ * array.
+ *
+ * @param arr
+ * @param s
+ */
public static void sort(double[] arr, Object[] s)
{
sort(arr, 0, arr.length - 1, s);
}
+ /**
+ * Sorts both arrays with respect to descending order of the items in the
+ * first array.
+ *
+ * @param arr
+ * @param s
+ */
public static void sort(String[] arr, Object[] s)
{
stringSort(arr, 0, arr.length - 1, s);
}
- public static void stringSort(String[] arr, int p, int r, Object[] s)
+ static void stringSort(String[] arr, int p, int r, Object[] s)
{
int q;
}
}
- public static void sort(float[] arr, int p, int r, Object[] s)
+ static void sort(float[] arr, int p, int r, Object[] s)
{
int q;
}
}
- public static void sort(double[] arr, int p, int r, Object[] s)
+ static void sort(double[] arr, int p, int r, Object[] s)
{
int q;
}
}
- public static void sort(int[] arr, int p, int r, Object[] s)
+ static void sort(int[] arr, int p, int r, Object[] s)
{
int q;
}
}
- private static int partition(float[] arr, int p, int r, Object[] s)
+ static int partition(float[] arr, int p, int r, Object[] s)
{
float x = arr[p];
int i = p - 1;
}
}
- private static int partition(int[] arr, int p, int r, Object[] s)
+ static int partition(int[] arr, int p, int r, Object[] s)
{
int x = arr[p];
int i = p - 1;
}
}
- private static int partition(double[] arr, int p, int r, Object[] s)
+ static int partition(double[] arr, int p, int r, Object[] s)
{
double x = arr[p];
int i = p - 1;
}
}
- private static int stringPartition(String[] arr, int p, int r, Object[] s)
+ static int stringPartition(String[] arr, int p, int r, Object[] s)
{
String x = arr[p];
int i = p - 1;