sg.cs = null;
continue;
}
- sg.cs = cs.applyTo(sg, getHiddenRepSequences());
+ sg.cs = cs.getInstance(sg, getHiddenRepSequences());
sg.setConsPercGaps(ConsPercGaps);
if (getAbovePIDThreshold() || cs instanceof PIDColourScheme
|| cs instanceof Blosum62ColourScheme)