import jalview.workers.AlignCalcManager;
import jalview.workers.ComplementConsensusThread;
import jalview.workers.ConsensusThread;
+import jalview.workers.ConservationThread;
import jalview.workers.StrucConsensusThread;
import java.awt.Color;
return;
}
if (calculator
- .getRegisteredWorkersOfClass(jalview.workers.ConservationThread.class) == null)
+.getRegisteredWorkersOfClass(ConservationThread.class) == null)
{
- calculator.registerWorker(new jalview.workers.ConservationThread(
+ calculator.registerWorker(new ConservationThread(
this, ap));
}
}
@Override
- public jalview.datamodel.AlignmentView getAlignmentView(
- boolean selectedOnly)
+ public AlignmentView getAlignmentView(boolean selectedOnly)
{
return getAlignmentView(selectedOnly, false);
}
@Override
- public jalview.datamodel.AlignmentView getAlignmentView(
- boolean selectedOnly, boolean markGroups)
+ public AlignmentView getAlignmentView(boolean selectedOnly,
+ boolean markGroups)
{
return new AlignmentView(alignment, colSel, selectionGroup,
colSel != null && colSel.hasHiddenColumns(), selectedOnly,