JAL-2629 some tidying of Hmmer commands (wip)

[jalview.git] / src / jalview / viewmodel / AlignmentViewport.java

diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java
index 04af232..46ebe01 100644 (file)
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -844,12 +844,6 @@ public abstract class AlignmentViewport
   }
 
   @Override
-  public AlignmentAnnotation getInformationAnnotation(int index)
-  {
-    return information.get(index);
-  }
-
-  @Override
   public AlignmentAnnotation getAlignmentGapAnnotation()
   {
     return gapcounts;
@@ -2174,8 +2168,6 @@ public abstract class AlignmentViewport
                 new Annotation[1], 0f, 6.52f,
                 AlignmentAnnotation.BAR_GRAPH);
         info.hasText = true;
-        info.autoCalculated = true;
-        info.hasText = true;
         info.autoCalculated = false;
         info.sequenceRef = seq;
         info.setCalcId(InformationThread.HMM_CALC_ID);
@@ -2183,7 +2175,6 @@ public abstract class AlignmentViewport
         hinformation.add(new Profiles(new ProfileI[1]));
         alignment.addAnnotation(info);
         seq.updateHMMMapping();
-        seq.setHasInfo(true);
         seq.addAlignmentAnnotation(info);
       }
     }