* view
*/
protected Hashtable[] hStrucConsensus = null;
-
+
+ protected Conservation hconservation = null;
+ @Override
+ public void setConservation(Conservation cons)
+ {
+ hconservation = cons;
+ }
/**
* percentage gaps allowed in a column before all amino acid properties should
* be considered unconserved
if (aan[an].autoCalculated && aan[an].groupRef != null)
{
oldrfs.add(aan[an].groupRef);
- alignment.deleteAnnotation(aan[an]);
- aan[an] = null;
+ alignment.deleteAnnotation(aan[an],false);
}
}
}