JAL-1551 remove temp file in src

[jalview.git] / src / jalview / viewmodel / AlignmentViewport.java

diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java
index 975b292..a648b34 100644 (file)
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -50,6 +50,7 @@ import jalview.datamodel.AlignmentI;
 import jalview.datamodel.AlignmentView;
 import jalview.datamodel.Annotation;
 import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.ContactListI;
 import jalview.datamodel.HiddenColumns;
 import jalview.datamodel.HiddenSequences;
 import jalview.datamodel.ProfilesI;
@@ -104,7 +105,7 @@ public abstract class AlignmentViewport
   /**
    * used to determine if quit should be confirmed
    */
-  private boolean savedUpToDate = true;
+  private boolean savedUpToDate = false;
 
   /**
    * alignment displayed in the viewport. Please use get/setter
@@ -2940,6 +2941,12 @@ public abstract class AlignmentViewport
     return searchResults;
   }
 
+  @Override
+  public ContactListI getContactList(AlignmentAnnotation _aa, int column)
+  {
+    return alignment.getContactListFor(_aa, column);
+  }
+
   /**
    * get the consensus sequence as displayed under the PID consensus annotation
    * row.