Merge branch 'features/JAL-2360colourSchemeApplicability' into features/JAL-2371colle...

[jalview.git] / src / jalview / viewmodel / AlignmentViewport.java

diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java
index 9f53f02..a9d3b77 100644 (file)
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -634,6 +634,8 @@ public abstract class AlignmentViewport implements AlignViewportI,
               || cs instanceof Blosum62ColourScheme)
       {
         globalColourScheme.setConservation(hconservation);
+        globalColourScheme
+                .setConservationApplied(getConservationSelected());
       }
       globalColourScheme.alignmentChanged(alignment, hiddenRepSequences);
     }