JAL-3700 JAL-3748 JAL-3763 don’t add stop codon via alignAs if guide peptide doesn...

[jalview.git] / src / jalview / viewmodel / styles / ViewStyle.java

diff --git a/src/jalview/viewmodel/styles/ViewStyle.java b/src/jalview/viewmodel/styles/ViewStyle.java
index d68227b..91f2f0c 100644 (file)
--- a/src/jalview/viewmodel/styles/ViewStyle.java
+++ b/src/jalview/viewmodel/styles/ViewStyle.java
@@ -214,6 +214,7 @@ public class ViewStyle implements ViewStyleI
     setShowSequenceFeaturesHeight(vs.isShowSequenceFeaturesHeight());
     setShowSequenceFeatures(vs.isShowSequenceFeatures());
     setShowComplementFeatures(vs.isShowComplementFeatures());
+    setShowComplementFeaturesOnTop(vs.isShowComplementFeaturesOnTop());
     setShowText(vs.getShowText());
     setShowUnconserved(vs.getShowUnconserved());
     setTextColour(vs.getTextColour());
@@ -277,6 +278,8 @@ public class ViewStyle implements ViewStyleI
                     .isShowSequenceFeaturesHeight()
             && isShowSequenceFeatures() == vs.isShowSequenceFeatures()
             && isShowComplementFeatures() == vs.isShowComplementFeatures()
+            && isShowComplementFeaturesOnTop() == vs
+                    .isShowComplementFeaturesOnTop()
             && getShowText() == vs.getShowText()
             && getShowUnconserved() == vs.getShowUnconserved()
             && getThreshold() == vs.getThreshold()
@@ -369,6 +372,8 @@ public class ViewStyle implements ViewStyleI
 
   private boolean showComplementFeatures;
 
+  private boolean showComplementFeaturesOnTop;
+
   /**
    * GUI state
    * 
@@ -1127,4 +1132,16 @@ public class ViewStyle implements ViewStyleI
   {
     return showComplementFeatures;
   }
+
+  @Override
+  public void setShowComplementFeaturesOnTop(boolean b)
+  {
+    showComplementFeaturesOnTop = b;
+  }
+
+  @Override
+  public boolean isShowComplementFeaturesOnTop()
+  {
+    return showComplementFeaturesOnTop;
+  }
 }