JAL-4409 Allow more URI schemes (e.g. file) to be opened in Jalview

[jalview.git] / src / jalview / workers / AlignCalcManager.java

diff --git a/src/jalview/workers/AlignCalcManager.java b/src/jalview/workers/AlignCalcManager.java
index 508a069..d64bf4d 100644 (file)
--- a/src/jalview/workers/AlignCalcManager.java
+++ b/src/jalview/workers/AlignCalcManager.java
@@ -20,10 +20,6 @@
  */
 package jalview.workers;
 
-import jalview.api.AlignCalcManagerI;
-import jalview.api.AlignCalcWorkerI;
-import jalview.datamodel.AlignmentAnnotation;
-
 import java.util.ArrayList;
 import java.util.Collection;
 import java.util.Collections;
@@ -33,6 +29,10 @@ import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
+import jalview.api.AlignCalcManagerI;
+import jalview.api.AlignCalcWorkerI;
+import jalview.datamodel.AlignmentAnnotation;
+
 public class AlignCalcManager implements AlignCalcManagerI
 {
   /*
@@ -145,7 +145,8 @@ public class AlignCalcManager implements AlignCalcManagerI
   {
     synchronized (inProgress)
     {
-      // jalview.bin.Console.errPrintln("Worker " + worker + " marked as complete.");
+      // jalview.bin.Console.errPrintln("Worker " + worker + " marked as
+      // complete.");
       inProgress.remove(worker);
       List<AlignCalcWorkerI> upd = updating.get(worker.getClass());
       if (upd != null)
@@ -201,7 +202,7 @@ public class AlignCalcManager implements AlignCalcManagerI
   @Override
   public boolean isWorking()
   {
-    boolean working=false;
+    boolean working = false;
     synchronized (inProgress)
     {
       // jalview.bin.Console.errPrintln("isWorking "+hashCode());
@@ -214,9 +215,10 @@ public class AlignCalcManager implements AlignCalcManagerI
       {
         for (List<AlignCalcWorkerI> workers : workersLists)
         {
-          if (workers!=null)
+          if (workers != null)
           {
-            synchronized (workers) {
+            synchronized (workers)
+            {
               working |= workers.size() > 0;
             }
           }