import jalview.api.AlignViewportI;
import jalview.api.AlignmentViewPanel;
+import jalview.bin.Jalview;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.Annotation;
import jalview.gui.AlignFrame;
-import jalview.gui.Desktop;
import java.awt.Color;
{
// TODO need an interface for AlignFrame by which to access
// its AlignViewportI and AlignmentViewPanel
- AlignFrame currentAlignFrame = Desktop.getCurrentAlignFrame();
+ AlignFrame currentAlignFrame = Jalview.getCurrentAlignFrame() ;
if (currentAlignFrame != null)
{
newCalculator(currentAlignFrame.getViewport(), currentAlignFrame
{
// TODO need an interface for AlignFrame by which to access
// its AlignViewportI and AlignmentViewPanel
- AlignFrame currentAlignFrame = Desktop.getCurrentAlignFrame();
+ AlignFrame currentAlignFrame = Jalview.getCurrentAlignFrame() ;
if (currentAlignFrame != null)
{
newCalculator(currentAlignFrame.getViewport(), currentAlignFrame