return;
}
- removeAnnotation();
if (alignViewport.getAlignment() != null)
{
try
{
Color color = ColorUtils.getGraduatedColour(count, 0, Color.cyan,
max, Color.blue);
- anns[i] = new Annotation(String.valueOf(count),
- String.valueOf(count), '0', count, color);
+ String str = String.valueOf(count);
+ anns[i] = new Annotation(str, str, '0', count, color);
}
}
/*
- * construct the annotation, save it and add it to the displayed alignment
+ * construct or update the annotation
*/
- AlignmentAnnotation ann = new AlignmentAnnotation(counter.getName(),
- counter.getDescription(), anns);
+ AlignmentAnnotation ann = alignViewport.getAlignment()
+ .findOrCreateAnnotation(counter.getName(),
+ counter.getDescription(), false, null, null);
+ ann.description = counter.getDescription();
ann.showAllColLabels = true;
+ ann.scaleColLabel = true;
ann.graph = AlignmentAnnotation.BAR_GRAPH;
- ourAnnots.add(ann);
- alignViewport.getAlignment().addAnnotation(ann);
+ ann.annotations = anns;
+ setGraphMinMax(ann, anns);
+ ann.validateRangeAndDisplay();
+ if (!ourAnnots.contains(ann))
+ {
+ ourAnnots.add(ann);
+ }
}
/**