*/
package jalview.workers;
-import java.util.Hashtable;
-
import jalview.analysis.AAFrequency;
-import jalview.api.AlignCalcWorkerI;
import jalview.api.AlignViewportI;
import jalview.api.AlignmentViewPanel;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.SequenceI;
import jalview.schemes.ColourSchemeI;
-public class ConsensusThread extends AlignCalcWorker implements
- AlignCalcWorkerI
+import java.util.Hashtable;
+
+public class ConsensusThread extends AlignCalcWorker
{
public ConsensusThread(AlignViewportI alignViewport,
AlignmentViewPanel alignPanel)
Hashtable[] hconsensus = new Hashtable[alignment.getWidth()];
SequenceI[] aseqs = getSequences();
- AAFrequency.calculate(aseqs, 0, alignment.getWidth(), hconsensus,
- true);
+ AAFrequency.calculate(aseqs, 0, alignment.getWidth(), hconsensus, true);
alignViewport.setSequenceConsensusHash(hconsensus);
setColourSchemeConsensus(hconsensus);