Merge branch 'develop' into menard

[jalview.git] / src / jalview / workers / StrucConsensusThread.java

diff --git a/src/jalview/workers/StrucConsensusThread.java b/src/jalview/workers/StrucConsensusThread.java
index abbfb23..266fdcd 100644 (file)
--- a/src/jalview/workers/StrucConsensusThread.java
+++ b/src/jalview/workers/StrucConsensusThread.java
@@ -1,3 +1,20 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ */
 package jalview.workers;
 
 import java.util.Hashtable;
@@ -89,10 +106,11 @@ public class StrucConsensusThread extends AlignCalcWorker implements
         return;
       }
 
-      try {
-              jalview.analysis.StructureFrequency.calculate(
-                         alignment.getSequencesArray(), 0, alignment.getWidth(),
-                      hStrucConsensus, true, rnaStruc);
+      try
+      {
+        jalview.analysis.StructureFrequency.calculate(
+                alignment.getSequencesArray(), 0, alignment.getWidth(),
+                hStrucConsensus, true, rnaStruc);
       } catch (ArrayIndexOutOfBoundsException x)
       {
         calcMan.workerComplete(this);
@@ -146,4 +164,4 @@ public class StrucConsensusThread extends AlignCalcWorker implements
     }
   }
 
-}
\ No newline at end of file
+}