(JAL-885 JAL-580) ignore invalid RNA structure lines

[jalview.git] / src / jalview / workers / StrucConsensusThread.java

diff --git a/src/jalview/workers/StrucConsensusThread.java b/src/jalview/workers/StrucConsensusThread.java
index 9143ad7..76b87a6 100644 (file)
--- a/src/jalview/workers/StrucConsensusThread.java
+++ b/src/jalview/workers/StrucConsensusThread.java
@@ -64,7 +64,7 @@ public class StrucConsensusThread extends AlignCalcWorker implements AlignCalcWo
       // select rna struct to use for calculation
       for (int i = 0; i < aa.length; i++)
       {
-        if (aa[i].getRNAStruc() != null)
+        if (aa[i].getRNAStruc() != null && aa[i].isValidStruc())
         {
           rnaStruc = aa[i];
           break;