JAL-1479 JAL- Fix to eradicate duplicate mapping output and further improvement for...

[jalview.git] / src / jalview / ws / AWSThread.java

diff --git a/src/jalview/ws/AWSThread.java b/src/jalview/ws/AWSThread.java
index fe28d6c..b158448 100644 (file)
--- a/src/jalview/ws/AWSThread.java
+++ b/src/jalview/ws/AWSThread.java
@@ -32,6 +32,7 @@ import jalview.util.MessageManager;
 import jalview.viewmodel.seqfeatures.FeatureRendererSettings;
 
 import java.util.LinkedHashSet;
+import java.util.List;
 import java.util.Set;
 
 public abstract class AWSThread extends Thread
@@ -98,6 +99,7 @@ public abstract class AWSThread extends Thread
   /**
    * generic web service job/subjob poll loop
    */
+  @Override
   public void run()
   {
     JobStateSummary jstate = null;
@@ -378,7 +380,7 @@ public abstract class AWSThread extends Thread
     WsUrl = wsurl2;
     if (alframe != null)
     {
-      Set<AlignedCodonFrame> cf = alframe.getViewport().getAlignment()
+      List<AlignedCodonFrame> cf = alframe.getViewport().getAlignment()
               .getCodonFrames();
       if (cf != null)
       {