JAL-1358 Cleaned up RNAalifoldClient.java. RNA helices colouring bug and parameters...

[jalview.git] / src / jalview / ws / AWSThread.java

diff --git a/src/jalview/ws/AWSThread.java b/src/jalview/ws/AWSThread.java
index 7300462..b5d8d51 100644 (file)
--- a/src/jalview/ws/AWSThread.java
+++ b/src/jalview/ws/AWSThread.java
@@ -1,13 +1,13 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
@@ -163,30 +163,7 @@ public abstract class AWSThread extends Thread
         jstate.updateJobPanelState(wsInfo, OutputHeader, jobs[j]);
       }
       // Decide on overall state based on collected jobs[] states
-      if (jstate.running > 0)
-      {
-        wsInfo.setStatus(WebserviceInfo.STATE_RUNNING);
-      }
-      else if (jstate.queuing > 0)
-      {
-        wsInfo.setStatus(WebserviceInfo.STATE_QUEUING);
-      }
-      else
-      {
-        jobComplete = true;
-        if (jstate.finished > 0)
-        {
-          wsInfo.setStatus(WebserviceInfo.STATE_STOPPED_OK);
-        }
-        else if (jstate.error > 0)
-        {
-          wsInfo.setStatus(WebserviceInfo.STATE_STOPPED_ERROR);
-        }
-        else if (jstate.serror > 0)
-        {
-          wsInfo.setStatus(WebserviceInfo.STATE_STOPPED_SERVERERROR);
-        }
-      }
+      updateGlobalStatus(jstate);
       if (!jobComplete)
       {
         try
@@ -214,6 +191,34 @@ public abstract class AWSThread extends Thread
     }
   }
 
+  protected void updateGlobalStatus(JobStateSummary jstate)
+  {
+    if (jstate.running > 0)
+    {
+      wsInfo.setStatus(WebserviceInfo.STATE_RUNNING);
+    }
+    else if (jstate.queuing > 0)
+    {
+      wsInfo.setStatus(WebserviceInfo.STATE_QUEUING);
+    }
+    else
+    {
+      jobComplete = true;
+      if (jstate.finished > 0)
+      {
+        wsInfo.setStatus(WebserviceInfo.STATE_STOPPED_OK);
+      }
+      else if (jstate.error > 0)
+      {
+        wsInfo.setStatus(WebserviceInfo.STATE_STOPPED_ERROR);
+      }
+      else if (jstate.serror > 0)
+      {
+        wsInfo.setStatus(WebserviceInfo.STATE_STOPPED_SERVERERROR);
+      }
+    }
+  }
+
   public AWSThread()
   {
     super();
@@ -337,6 +342,7 @@ public abstract class AWSThread extends Thread
 
   /**
    * Extracts additional info from alignment view's context.
+   * 
    * @param alframe
    *          - reference for copying mappings and display styles across
    * @param wsinfo2