public void run()
{
running = true;
- boolean isNucleotide = af.getViewport().getAlignment()
- .isNucleotide();
+ boolean isNucleotide = af.getViewport().getAlignment().isNucleotide();
new DBRefFetcher(sequences, af, null, af.featureSettings,
isNucleotide).fetchDBRefs(true);
{
jalviewSourceI[] sources = sourceRegistry.getSources().toArray(
new jalviewSourceI[0]);
- String active = Cache.getDefault("DAS_ACTIVE_SOURCE",
- "uniprot");
+ String active = Cache.getDefault("DAS_ACTIVE_SOURCE", "uniprot");
StringTokenizer st = new StringTokenizer(active, "\t");
selectedSources = new Vector();
String token;
{
return null;
}
- DBRefEntry[] uprefs = DBRefUtils.selectRefs(
- seq.getDBRefs(), new String[] {
+ DBRefEntry[] uprefs = DBRefUtils.selectRefs(seq.getDBRefs(),
+ new String[] {
// jalview.datamodel.DBRefSource.PDB,
DBRefSource.UNIPROT,
// jalview.datamodel.DBRefSource.EMBL - not tested on any EMBL coord
for (COORDINATES csys : dasSource.getVersion().getCOORDINATES())
{
- if (DBRefUtils.isDasCoordinateSystem(
- csys.getAuthority(), uprefs[j]))
+ if (DBRefUtils.isDasCoordinateSystem(csys.getAuthority(),
+ uprefs[j]))
{
debug("Launched fetcher for coordinate system "
+ csys.getAuthority());