vamsasDemo new branch

[jalview.git] / src / jalview / ws / JPredClient.java

diff --git a/src/jalview/ws/JPredClient.java b/src/jalview/ws/JPredClient.java
index fdf0cec..4cb8aee 100755 (executable)
--- a/src/jalview/ws/JPredClient.java
+++ b/src/jalview/ws/JPredClient.java
@@ -173,7 +173,8 @@ public class JPredClient
                                                 msf[0].getSequence()));\r
 \r
       this.msa = new vamsas.objects.simple.Msfalignment();\r
-      msa.setMsf(jalview.io.PileUpfile.print(msf));\r
+      jalview.io.PileUpfile pileup = new jalview.io.PileUpfile();\r
+      msa.setMsf(pileup.print(msf));\r
     }\r
 \r
     public void run()\r