/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
*
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
*/
package jalview.ws;
* crate a new GUI JPred Job
*
* @param sh
- * ServiceHandle
+ * ServiceHandle
* @param title
- * String
+ * String
* @param msa
- * boolean - true - submit alignment as a sequence profile
+ * boolean - true - submit alignment as a sequence profile
* @param alview
- * AlignmentView
+ * AlignmentView
* @param viewonly
- * TODO
+ * TODO
*/
public JPredClient(ext.vamsas.ServiceHandle sh, String title,
boolean msa, AlignmentView alview, AlignFrame parentFrame,
* and short seqs)
*
* @param title
- * String
+ * String
* @param msa
- * boolean
+ * boolean
* @param alview
- * AlignmentView
+ * AlignmentView
* @param viewonly
- * if true then the prediction will be made just on the
- * concatenated visible regions
+ * if true then the prediction will be made just on the concatenated
+ * visible regions
*/
private void startJPredClient(String title, boolean msa,
jalview.datamodel.AlignmentView alview, AlignFrame parentFrame,
try
{
server = loc.getjpred(new java.net.URL(WsURL)); // JBPNote will be set
- // from properties
+ // from properties
((JpredSoapBindingStub) server).setTimeout(60000); // one minute stub
// ((JpredSoapBindingStub)this.server)._setProperty(org.apache.axis.encoding.C,
// Boolean.TRUE);