" Service location failed\nfor URL :" + WsURL +\r
"\n" +\r
ex.getMessage());\r
- wsInfo.setStatus(wsInfo.ERROR);\r
+ wsInfo.setStatus(WebserviceInfo.ERROR);\r
ex.printStackTrace();\r
\r
return false;\r
throw (new Exception(\r
"Timed out when communicating with server\nTry again later.\n"));\r
}\r
- jalview.bin.Jalview.log.debug("Result state " + result.getState() +\r
+ jalview.bin.Cache.log.debug("Result state " + result.getState() +\r
"(ServerError=" + result.isServerError() +\r
")");\r
if (result.isRunning())\r
{\r
if (result.getStatus() != null)\r
{\r
- System.out.println("result "+result.getStatus().length());\r
- wsInfo.setProgressText(OutputHeader + "\n" );\r
- // result.getStatus());\r
+ wsInfo.setProgressText(OutputHeader + "\n"+ result.getStatus());\r
}\r
if (result.isServerError())\r
{\r
+"\nSee help files for increasing Java Virtual Machine memory."\r
,"Out of memory", JOptionPane.WARNING_MESSAGE );\r
System.out.println("MsaWSClient: "+er);\r
+ System.gc();\r
}\r
}\r
\r
e.toString() +\r
"\n");\r
this.allowedServerExceptions = 0;\r
- wsInfo.setStatus(wsInfo.STATE_STOPPED_SERVERERROR);\r
+ wsInfo.setStatus(WebserviceInfo.STATE_STOPPED_SERVERERROR);\r
wsInfo.appendProgressText(\r
"Failed to submit sequences for alignment.\n" +\r
"It is most likely that there is a problem with the server.\n" +\r
\r
if (result.getStatus() != null)\r
{\r
- System.out.println("get status " +result.getStatus().length());\r
- // OutputHeader += ("\n" + result.getStatus());\r
+ OutputHeader += ("\n" + result.getStatus());\r
}\r
\r
if (result.getMsa() != null)\r
{\r
- System.out.println("get msa");\r
- // OutputHeader += "\nAlignment Object Method Notes\n";\r
+ OutputHeader += "\nAlignment Object Method Notes\n";\r
\r
String[] lines = result.getMsa().getMethod();\r
\r
-System.out.println("lines "+lines.length);\r
for (int line = 0; line < lines.length; line++)\r
{\r
- // OutputHeader += (lines[line] + "\n");\r
+ OutputHeader += (lines[line] + "\n");\r
}\r
\r
// JBPNote The returned files from a webservice could be hidden behind icons in the monitor window that, when clicked, pop up their corresponding data\r