-package jalview.ws;
-import java.util.Hashtable;
-/**
- * <p>Title: MsaWServices </p>
- *
- * <p>Description: Registry of MsaWSI style services </p>
- *
- * <p>Copyright: Copyright (c) 2004</p>
- *
- * <p>Company: Dundee University</p>
- *
- * @author not attributable
- * @version 1.0
- */
-/**
- * TODO: MsaWServices will be set from properties and be dynamically discovered.
- */
-public class MsaWServices {
- public static Hashtable info;
- static
- {
- info = new Hashtable();
- info.put("ClustalWS",
- new String[]
- {
- "http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS",
- "ClustalW Alignment job",
- "\"Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple" +
- " sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice."
- + " Nucleic Acids Research, submitted, June 1994."
- });
- info.put("MuscleWS",
- new String[]
- {
- "http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS",
- "Muscle Alignment job",
- "Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment "
- +
- "with high accuracy and high throughput, Nucleic Acids Research 32(5), 1792-97."
- });
- };
-}
+/*\r
+* Jalview - A Sequence Alignment Editor and Viewer\r
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+*\r
+* This program is free software; you can redistribute it and/or\r
+* modify it under the terms of the GNU General Public License\r
+* as published by the Free Software Foundation; either version 2\r
+* of the License, or (at your option) any later version.\r
+*\r
+* This program is distributed in the hope that it will be useful,\r
+* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+* GNU General Public License for more details.\r
+*\r
+* You should have received a copy of the GNU General Public License\r
+* along with this program; if not, write to the Free Software\r
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+*/\r
+package jalview.ws;\r
+\r
+import java.util.Hashtable;\r
+\r
+\r
+/**\r
+ * <p>Title: MsaWServices </p>\r
+ *\r
+ * <p>Description: Registry of MsaWSI style services </p>\r
+ *\r
+ * <p>Copyright: Copyright (c) 2004</p>\r
+ *\r
+ * <p>Company: Dundee University</p>\r
+ *\r
+ * @author not attributable\r
+ * @version 1.0\r
+ */\r
+/**\r
+ * TODO: MsaWServices will be set from properties and be dynamically discovered.\r
+ */\r
+public class MsaWServices\r
+{\r
+ /** DOCUMENT ME!! */\r
+ public static Hashtable info;\r
+\r
+ static\r
+ {\r
+ info = new Hashtable();\r
+ info.put("ClustalWS",\r
+ new String[]\r
+ {\r
+ "http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS",\r
+ "ClustalW Alignment job",\r
+ \r
+ "\"Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple" +\r
+ " sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice." +\r
+ " Nucleic Acids Research, 22 4673-4680"\r
+ });\r
+ info.put("MuscleWS",\r
+ new String[]\r
+ {\r
+ "http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS",\r
+ "Muscle Alignment job",\r
+ \r
+ "Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment " +\r
+ "with high accuracy and high throughput, Nucleic Acids Research 32(5), 1792-97."\r
+ });\r
+ }\r
+}\r