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[jalview.git] / src / jalview / ws / MsaWServices.java

diff --git a/src/jalview/ws/MsaWServices.java b/src/jalview/ws/MsaWServices.java
index f881bd5..75ddf16 100755 (executable)
--- a/src/jalview/ws/MsaWServices.java
+++ b/src/jalview/ws/MsaWServices.java
@@ -1,61 +1,67 @@
-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
-*/
-
-package jalview.ws;
-import java.util.Hashtable;
-/**
- * <p>Title: MsaWServices </p>
- *
- * <p>Description: Registry of MsaWSI style services </p>
- *
- * <p>Copyright: Copyright (c) 2004</p>
- *
- * <p>Company: Dundee University</p>
- *
- * @author not attributable
- * @version 1.0
- */
-/**
- * TODO: MsaWServices will be set from properties and be dynamically discovered.
- */
-public class MsaWServices {
-  public static Hashtable info;
-  static
-  {
-    info = new Hashtable();
-    info.put("ClustalWS",
-             new String[]
-             {
-             "http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS",
-             "ClustalW Alignment job",
-             "\"Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple" +
-             " sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice."
-             + " Nucleic Acids Research, submitted, June 1994."
-    });
-    info.put("MuscleWS",
-             new String[]
-             {
-             "http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS",
-             "Muscle Alignment job",
-             "Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment "
-             +
-             "with high accuracy and high throughput, Nucleic Acids Research 32(5), 1792-97."
-    });
-  };
-}
+/*\r
+* Jalview - A Sequence Alignment Editor and Viewer\r
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+*\r
+* This program is free software; you can redistribute it and/or\r
+* modify it under the terms of the GNU General Public License\r
+* as published by the Free Software Foundation; either version 2\r
+* of the License, or (at your option) any later version.\r
+*\r
+* This program is distributed in the hope that it will be useful,\r
+* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+* GNU General Public License for more details.\r
+*\r
+* You should have received a copy of the GNU General Public License\r
+* along with this program; if not, write to the Free Software\r
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+*/\r
+package jalview.ws;\r
+\r
+import java.util.Hashtable;\r
+\r
+\r
+/**\r
+ * <p>Title: MsaWServices </p>\r
+ *\r
+ * <p>Description: Registry of MsaWSI style services </p>\r
+ *\r
+ * <p>Copyright: Copyright (c) 2004</p>\r
+ *\r
+ * <p>Company: Dundee University</p>\r
+ *\r
+ * @author not attributable\r
+ * @version 1.0\r
+ */\r
+/**\r
+ * TODO: MsaWServices will be set from properties and be dynamically discovered.\r
+ */\r
+public class MsaWServices\r
+{\r
+    /** DOCUMENT ME!! */\r
+    public static Hashtable info;\r
+\r
+    static\r
+    {\r
+        info = new Hashtable();\r
+        info.put("ClustalWS",\r
+            new String[]\r
+            {\r
+                "http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS",\r
+                "ClustalW Alignment job",\r
+                \r
+            "\"Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple" +\r
+                " sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice." +\r
+                " Nucleic Acids Research, 22 4673-4680"\r
+            });\r
+        info.put("MuscleWS",\r
+            new String[]\r
+            {\r
+                "http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS",\r
+                "Muscle Alignment job",\r
+                \r
+            "Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment " +\r
+                "with high accuracy and high throughput, Nucleic Acids Research 32(5), 1792-97."\r
+            });\r
+    }\r
+}\r