MapList getMapFor(SequenceI sequenceRef);
/**
- * Locate a position in the mapped sequence for a single column in the matrix.
+ * Locate a position in the mapped sequence for a single column in the matrix.
* this to resolve positions corresponding to column clusters
*
* @param localFrame
int[] getMappedPositionsFor(SequenceI localFrame, int column);
/**
- * Locate a position in the mapped sequence for a contiguous range of columns in the matrix
- * use this to resolve positions corresponding to column clusters
+ * Locate a position in the mapped sequence for a contiguous range of columns
+ * in the matrix use this to resolve positions corresponding to column
+ * clusters
*
* @param localFrame
* - sequence derivced from reference sequence