@SuppressWarnings("unchecked")
public PAEContactMatrix(SequenceI _refSeq, Map<String, Object> pae_obj)
- throws Exception
{
refSeq = _refSeq;
while (refSeq.getDatasetSequence() != null)
return new ContactListImpl(new ContactListProviderI()
{
@Override
+ public int getPosition()
+ {
+ return _column;
+ }
+
+ @Override
public int getContactHeight()
{
return maxcol - 1;
return refSeq;
}
+ @Override
+ public String getAnnotDescr()
+ {
+ return "Predicted Alignment Error for " + refSeq.getName();
+ }
+
+ @Override
+ public String getAnnotLabel()
+ {
+ return "pAE Matrix";
+ }
}