package jalview.ws.datamodel.alphafold;
+import java.awt.Color;
import java.util.ArrayList;
import java.util.BitSet;
+import java.util.HashMap;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
groups.add(gpset);
}
}
-
+ @Override
+ public void updateGroups(List<BitSet> colGroups)
+ {
+ if (colGroups!=null)
+ {
+ groups=colGroups;
+ }
+ }
@Override
public BitSet getGroupsFor(int column)
{
return ContactMatrixI.super.getGroupsFor(column);
}
+ HashMap<BitSet,Color> colorMap = new HashMap<>();
+ @Override
+ public Color getColourForGroup(BitSet bs)
+ {
+ if (bs==null) {
+ return Color.white;
+ }
+ Color groupCol=colorMap.get(bs);
+ if (groupCol==null)
+ {
+ return Color.white;
+ }
+ return groupCol;
+ }
+ @Override
+ public void setColorForGroup(BitSet bs,Color color)
+ {
+ colorMap.put(bs,color);
+ }
public void restoreGroups(List<BitSet> newgroups, String treeMethod,
String tree, double thresh2)
{