JAL-3855 import pAE when StructureSelectionManager parses an alphaFold structure...

[jalview.git] / src / jalview / ws / dbsources / EBIAlfaFold.java

diff --git a/src/jalview/ws/dbsources/EBIAlfaFold.java b/src/jalview/ws/dbsources/EBIAlfaFold.java
index fa867cd..0e148ff 100644 (file)
--- a/src/jalview/ws/dbsources/EBIAlfaFold.java
+++ b/src/jalview/ws/dbsources/EBIAlfaFold.java
@@ -274,6 +274,9 @@ public class EBIAlfaFold extends EbiFileRetrievedProxy
             pdbAlignment.getSequenceAt(0),
             (Map<String, Object>) pae_obj.get(0));
 
+    // THIS IS NOT GOING TO WORK !!!
+    // ?? StructureFile assumes sequenceI holds all data, so AlignmentAnnotation
+    // needs to hold the contact matrix data.
     pdbAlignment.getSequenceAt(0)
             .addAlignmentAnnotation(pdbAlignment.addContactList(matrix));
     return true;