}
public static boolean importPaeJSONAsContactMatrixToSequence(
+ AlignmentI pdbAlignment, File paeFile, int index, String seqId)
+ throws FileNotFoundException, IOException, ParseException
+ {
+ return importPaeJSONAsContactMatrixToSequence(pdbAlignment,
+ new FileInputStream(paeFile), index, seqId);
+ }
+
+ public static boolean importPaeJSONAsContactMatrixToSequence(
AlignmentI pdbAlignment, InputStream pae_input, int index,
String seqId) throws IOException, ParseException
{
}
public static boolean importPaeJSONAsContactMatrixToStructure(
+ StructureMapping sm, File paeFile)
+ throws FileNotFoundException, IOException, ParseException
+ {
+ return importPaeJSONAsContactMatrixToStructure(sm,
+ new FileInputStream(paeFile));
+ }
+
+ public static boolean importPaeJSONAsContactMatrixToStructure(
StructureMapping sm, InputStream paeInput)
throws IOException, ParseException
{
-
JSONObject pae_obj = parseJSONtoPAEContactMatrix(paeInput);
if (pae_obj == null)
{