-package jalview.ws.dbsources;\r
-\r
-import java.io.BufferedReader;\r
-import java.io.File;\r
-import java.io.FileReader;\r
-\r
-import com.stevesoft.pat.Regex;\r
-\r
-import jalview.datamodel.AlignmentI;\r
-import jalview.ws.DbSourceProxyImpl;\r
-\r
-public abstract class EbiFileRetrievedProxy extends DbSourceProxyImpl\r
-{\r
-\r
- /**\r
- * temp path to retrieved file\r
- */\r
- protected String file = null;\r
-\r
- public StringBuffer getRawRecords()\r
- {\r
- if (file==null)\r
- return null;\r
- StringBuffer bf=null;\r
- try {\r
- File f = new File(file);\r
- if (f.exists())\r
- {\r
- bf = new StringBuffer();\r
- BufferedReader breader = new BufferedReader(new FileReader(f));\r
- String line=null;\r
- while (breader.ready() && (line = breader.readLine())!=null)\r
- {\r
- bf.append(line);\r
- }\r
- breader.close();\r
- }\r
- } catch (Exception e)\r
- {\r
- System.err.println("Warning: problens reading temp file "+file);\r
- return null;\r
- }\r
- return bf;\r
- }\r
-\r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.ws.dbsources;
+
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.FileReader;
+import jalview.ws.seqfetcher.DbSourceProxyImpl;
+
+public abstract class EbiFileRetrievedProxy extends DbSourceProxyImpl
+{
+
+ /**
+ * temp path to retrieved file
+ */
+ protected String file = null;
+
+ public StringBuffer getRawRecords()
+ {
+ if (file == null)
+ return null;
+ StringBuffer bf = null;
+ try
+ {
+ File f = new File(file);
+ if (f.exists())
+ {
+ bf = new StringBuffer();
+ BufferedReader breader = new BufferedReader(new FileReader(f));
+ String line = null;
+ while (breader.ready() && (line = breader.readLine()) != null)
+ {
+ bf.append(line);
+ }
+ breader.close();
+ }
+ } catch (Exception e)
+ {
+ System.err.println("Warning: problems reading temp file " + file);
+ return null;
+ }
+ return bf;
+ }
+
+}