+/*\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)\r
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
+ * \r
+ * This file is part of Jalview.\r
+ * \r
+ * Jalview is free software: you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License \r
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
+ * \r
+ * Jalview is distributed in the hope that it will be useful, but \r
+ * WITHOUT ANY WARRANTY; without even the implied warranty \r
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
+ * PURPOSE. See the GNU General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.\r
+ */\r
package jalview.ws.dbsources;\r
\r
import java.io.BufferedReader;\r
import com.stevesoft.pat.Regex;\r
\r
import jalview.datamodel.AlignmentI;\r
-import jalview.ws.DbSourceProxyImpl;\r
+import jalview.ws.seqfetcher.DbSourceProxyImpl;\r
\r
public abstract class EbiFileRetrievedProxy extends DbSourceProxyImpl\r
{\r
\r
public StringBuffer getRawRecords()\r
{\r
- if (file==null)\r
+ if (file == null)\r
return null;\r
- StringBuffer bf=null;\r
- try {\r
+ StringBuffer bf = null;\r
+ try\r
+ {\r
File f = new File(file);\r
if (f.exists())\r
{\r
bf = new StringBuffer();\r
BufferedReader breader = new BufferedReader(new FileReader(f));\r
- String line=null;\r
- while (breader.ready() && (line = breader.readLine())!=null)\r
+ String line = null;\r
+ while (breader.ready() && (line = breader.readLine()) != null)\r
{\r
bf.append(line);\r
}\r
}\r
} catch (Exception e)\r
{\r
- System.err.println("Warning: problens reading temp file "+file);\r
+ System.err.println("Warning: problems reading temp file " + file);\r
return null;\r
}\r
return bf;\r