/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
*/
package jalview.ws.dbsources;
-import java.io.File;
-
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceI;
import jalview.util.MessageManager;
import jalview.ws.ebi.EBIFetchClient;
+import java.io.File;
+
public abstract class EmblXmlSource extends EbiFileRetrievedProxy
{
} catch (Exception e)
{
stopQuery();
- throw new Exception(MessageManager.formatMessage("exception.ebiembl_retrieval_failed_on", new String[]{emprefx.toLowerCase(),query.trim()}), e);
+ throw new Exception(MessageManager.formatMessage(
+ "exception.ebiembl_retrieval_failed_on", new String[] {
+ emprefx.toLowerCase(), query.trim() }), e);
}
return getEmblSequenceRecords(emprefx, query, reply);
}
}
else
{
- result.append(MessageManager.formatMessage("label.no_embl_record_found", new String[]{emprefx.toLowerCase(),query.trim()}));
+ result.append(MessageManager.formatMessage(
+ "label.no_embl_record_found",
+ new String[] { emprefx.toLowerCase(), query.trim() }));
}
}
if (efile != null)
if (seqs != null && seqs.length > 0)
{
al = new Alignment(seqs);
- result.append(MessageManager.formatMessage("label.embl_successfully_parsed", new String[]{emprefx}));
+ result.append(MessageManager.formatMessage(
+ "label.embl_successfully_parsed", new String[] { emprefx }));
results = result;
}
stopQuery();