{
reply = dbFetch.fetchDataAsFile(
emprefx.toLowerCase() + ":" + query.trim(), "display=xml",
- ".xml");
+ "xml");
} catch (Exception e)
{
stopQuery();
throw new Exception(MessageManager.formatMessage(
- "exception.ebiembl_retrieval_failed_on", new String[] {
- emprefx.toLowerCase(), query.trim() }), e);
+ "exception.ebiembl_retrieval_failed_on", new String[]
+ { emprefx.toLowerCase(), query.trim() }), e);
}
return getEmblSequenceRecords(emprefx, query, reply);
}
File reply) throws Exception
{
EmblFile efile = null;
- List<SequenceI> seqs = new ArrayList<SequenceI>();
+ List<SequenceI> seqs = new ArrayList<>();
if (reply != null && reply.exists())
{
* EmbFile reads something like (e.g.) this ungrammatical phrase
* Entry: <acc> display type is either not supported or entry is not found.
*/
- List<SequenceI> peptides = new ArrayList<SequenceI>();
+ List<SequenceI> peptides = new ArrayList<>();
if (efile != null && efile.getEntries() != null)
{
for (EmblEntry entry : efile.getEntries())