import jalview.datamodel.DBRefSource;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
+import jalview.io.AppletFormatAdapter;
import jalview.io.FormatAdapter;
import jalview.util.MessageManager;
import jalview.ws.ebi.EBIFetchClient;
{
pdbfile = new FormatAdapter().readFile(file,
- jalview.io.AppletFormatAdapter.FILE, "PDB");
+ AppletFormatAdapter.FILE, "PDB");
if (pdbfile != null)
{
List<SequenceI> toremove = new ArrayList<SequenceI>();
|| chid.trim().equals(chain.trim()) || (chain
.trim().length() == 0 && chid.equals("_")))))
{
- pdbcs.setName(jalview.datamodel.DBRefSource.PDB + "|" + id
+ pdbcs.setName(DBRefSource.PDB + "|" + id
+ "|" + pdbcs.getName());
// Might need to add more metadata to the PDBEntry object
// like below