formatting

[jalview.git] / src / jalview / ws / dbsources / PfamFull.java

diff --git a/src/jalview/ws/dbsources/PfamFull.java b/src/jalview/ws/dbsources/PfamFull.java
index 3d3ab53..57f8dc5 100644 (file)
--- a/src/jalview/ws/dbsources/PfamFull.java
+++ b/src/jalview/ws/dbsources/PfamFull.java
@@ -1,5 +1,19 @@
-/**\r
+/*\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)\r
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle\r
+ * \r
+ * This file is part of Jalview.\r
+ * \r
+ * Jalview is free software: you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License \r
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
  * \r
+ * Jalview is distributed in the hope that it will be useful, but \r
+ * WITHOUT ANY WARRANTY; without even the implied warranty \r
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
+ * PURPOSE.  See the GNU General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.\r
  */\r
 package jalview.ws.dbsources;\r
 \r
@@ -7,7 +21,7 @@ import jalview.ws.seqfetcher.DbSourceProxy;
 \r
 /**\r
  * flyweight class specifying retrieval of Full family alignments from PFAM\r
- *\r
+ * \r
  */\r
 public class PfamFull extends Pfam implements DbSourceProxy\r
 {\r
@@ -16,28 +30,39 @@ public class PfamFull extends Pfam implements DbSourceProxy
     super();\r
   }\r
 \r
-  /* (non-Javadoc)\r
+  /*\r
+   * (non-Javadoc)\r
+   * \r
    * @see jalview.ws.dbsources.Pfam#getPFAMURL()\r
    */\r
-  protected String getPFAMURL()\r
+  protected String getXFAMURL()\r
   {\r
     return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=full&format=stockholm&order=t&case=l&gaps=default&entry=";\r
   }\r
 \r
-  /* (non-Javadoc)\r
+  /*\r
+   * (non-Javadoc)\r
+   * \r
    * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()\r
    */\r
   public String getDbName()\r
   {\r
     return "PFAM (Full)";\r
   }\r
+\r
   public String getDbSource()\r
   {\r
     return getDbName(); // so we have unique DbSource string.\r
   }\r
+\r
   public String getTestQuery()\r
   {\r
-    return "PF00535"; // TODO: Pick a better full alignment to retrieve.\r
+    return "PF03760";\r
+  }\r
+\r
+  public String getDbVersion()\r
+  {\r
+    return null;\r
   }\r
 \r
 }\r