-/**\r
+/*\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)\r
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle\r
+ * \r
+ * This file is part of Jalview.\r
+ * \r
+ * Jalview is free software: you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License \r
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
+ * \r
+ * Jalview is distributed in the hope that it will be useful, but \r
+ * WITHOUT ANY WARRANTY; without even the implied warranty \r
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
+ * PURPOSE. See the GNU General Public License for more details.\r
* \r
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.\r
*/\r
package jalview.ws.dbsources;\r
\r
\r
/**\r
* flyweight class specifying retrieval of Seed alignments from PFAM\r
+ * \r
* @author JimP\r
- *\r
+ * \r
*/\r
public class PfamSeed extends Pfam implements DbSourceProxy\r
{\r
super();\r
}\r
\r
- /* (non-Javadoc)\r
+ /*\r
+ * (non-Javadoc)\r
+ * \r
* @see jalview.ws.dbsources.Pfam#getPFAMURL()\r
*/\r
- protected String getPFAMURL()\r
+ protected String getXFAMURL()\r
{\r
return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&format=stockholm&order=t&case=l&gaps=default&entry=";\r
}\r
\r
- /* (non-Javadoc)\r
+ /*\r
+ * (non-Javadoc)\r
+ * \r
* @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()\r
*/\r
public String getDbName()\r
{\r
return "PFAM (Seed)";\r
}\r
+\r
public String getDbSource()\r
{\r
return jalview.datamodel.DBRefSource.PFAM; // archetype source\r
}\r
+\r
public String getTestQuery()\r
{\r
- return "PF00535";\r
+ return "PF03760";\r
}\r
\r
}\r