JAL-2189 source formatting

[jalview.git] / src / jalview / ws / dbsources / Uniprot.java

diff --git a/src/jalview/ws/dbsources/Uniprot.java b/src/jalview/ws/dbsources/Uniprot.java
index 4c53ef9..4030d8c 100644 (file)
--- a/src/jalview/ws/dbsources/Uniprot.java
+++ b/src/jalview/ws/dbsources/Uniprot.java
@@ -193,7 +193,8 @@ public class Uniprot extends DbSourceProxyImpl
    *          UniprotEntry
    * @return SequenceI instance created from the UniprotEntry instance
    */
-  public SequenceI uniprotEntryToSequenceI(UniprotEntry entry){
+  public SequenceI uniprotEntryToSequenceI(UniprotEntry entry)
+  {
     String id = getUniprotEntryId(entry);
     SequenceI sequence = new Sequence(id, entry.getUniprotSequence()
             .getContent());
@@ -267,12 +268,10 @@ public class Uniprot extends DbSourceProxyImpl
         sequence.addSequenceFeature(sf);
       }
     }
-    // we use setDBRefs to assign refs quickly.
-    sequence.setDBRefs(dbRefs.toArray(new DBRefEntry[0]));
-    // need to use ensurePrimaries to reify any refs that should become primary
-    // refs
-    DBRefUtils.ensurePrimaries(sequence); // promote any direct refs to primary
-                                          // source dbs
+    for (DBRefEntry dbr : dbRefs)
+    {
+      sequence.addDBRef(dbr);
+    }
     return sequence;
   }