// retrieved.
startQuery();
// TODO: trap HTTP 404 exceptions and return null
- String xfamUrl = getXFAMURL()
- + queries.trim().toUpperCase() + getXFAMURLSUFFIX();
+ String xfamUrl = getXFAMURL() + queries.trim().toUpperCase()
+ + getXFAMURLSUFFIX();
if (Cache.log != null)
{
Cache.log.debug("XFAM URL for retrieval is: " + xfamUrl);
}
- AlignmentI rcds = new FormatAdapter().readFile(xfamUrl ,
+ AlignmentI rcds = new FormatAdapter().readFile(xfamUrl,
DataSourceType.URL, FileFormat.Stockholm);
for (int s = 0, sNum = rcds.getHeight(); s < sNum; s++)
{
rcds.getSequenceAt(s).addDBRef(new DBRefEntry(getXfamSource(),
- // getDbSource(),
+ // getDbSource(),
getDbVersion(), queries.trim().toUpperCase()));
if (!getDbSource().equals(getXfamSource()))
{ // add the specific ref too
- rcds.getSequenceAt(s).addDBRef(
- new DBRefEntry(getDbSource(), getDbVersion(), queries
- .trim().toUpperCase()));
+ rcds.getSequenceAt(s).addDBRef(new DBRefEntry(getDbSource(),
+ getDbVersion(), queries.trim().toUpperCase()));
}
}
stopQuery();