/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
{
for (CAPABILITY p : getVersion().getCAPABILITY())
{
- if (p.getType().equalsIgnoreCase(capability.getName())
- || p.getType().equalsIgnoreCase(
- "das1:" + capability.getName()))
+ if (p.getType().equalsIgnoreCase(capability.getName()) || p.getType()
+ .equalsIgnoreCase("das1:" + capability.getName()))
{
return p;
}
for (COORDINATES cs : v.getCOORDINATES())
{
COORDINATES ltst = latestc.get(cs.getUri());
- if (ltst == null
- || ltst.getVersion() == null
- || (ltst.getVersion() != null && cs.getVersion() != null && isLaterThan(
- ltst.getVersion(), cs.getVersion())))
+ if (ltst == null || ltst.getVersion() == null
+ || (ltst.getVersion() != null && cs.getVersion() != null
+ && isLaterThan(ltst.getVersion(), cs.getVersion())))
{
latestc.put(cs.getUri(), cs);
}
*/
try
{
- seqsources.add(ds = new DasSequenceSource(getTitle() + " ("
- + cs.getAuthority() + " " + cs.getSource()
- + (cs.getVersion() != null ? " " + cs.getVersion() : "")
- + ")", cs.getAuthority(), source, v, cs, connprov));
+ seqsources.add(ds = new DasSequenceSource(
+ getTitle() + " (" + cs.getAuthority() + " "
+ + cs.getSource()
+ + (cs.getVersion() != null ? " " + cs.getVersion()
+ : "")
+ + ")",
+ cs.getAuthority(), source, v, cs, connprov));
if (seqsources.size() > 1)
{
System.err.println("Added another sequence DB source for "
{
try
{
- seqsources.add(new DasSequenceSource(getTitle(), getTitle(),
- source, getVersion(), null, connprov));
+ seqsources.add(new DasSequenceSource(getTitle(), getTitle(), source,
+ getVersion(), null, connprov));
} catch (Exception e)
{
// TODO Auto-generated catch block
for (CAPABILITY cap : getVersion().getCAPABILITY())
{
- String capname = cap.getType().substring(
- cap.getType().indexOf(":") + 1);
+ String capname = cap.getType()
+ .substring(cap.getType().indexOf(":") + 1);
int p = cap.getQueryUri().lastIndexOf(capname);
if (p < -1)
{
throw new Exception(MessageManager.formatMessage(
- "exception.invalid_das_source",
- new String[] { source.getUri() }));
+ "exception.invalid_das_source", new String[]
+ { source.getUri() }));
}
if (cap.getQueryUri().charAt(p) == '/')
{
@Override
public boolean isNewerThan(jalviewSourceI other)
{
- return isLaterThan(getVersion().getCreated(), other.getVersion()
- .getCreated());
+ return isLaterThan(getVersion().getCreated(),
+ other.getVersion().getCreated());
}
@Override