JAL-3285 small code changes to ConsensusThread not included in merge

[jalview.git] / src / jalview / ws / ebi / HmmerJSONProcessor.java

diff --git a/src/jalview/ws/ebi/HmmerJSONProcessor.java b/src/jalview/ws/ebi/HmmerJSONProcessor.java
index a3eecd3..428c498 100644 (file)
--- a/src/jalview/ws/ebi/HmmerJSONProcessor.java
+++ b/src/jalview/ws/ebi/HmmerJSONProcessor.java
@@ -181,7 +181,9 @@ public class HmmerJSONProcessor
           hitseq.addSequenceFeature(new SequenceFeature(
                   "Pfam Domain Architecture", (hmmrhit.get("archindex"))
                           + " " + (arch = (String) hmmrhit.get("arch")), 0,
-                  0, Integer.valueOf((String) hmmrhit.get("archScore")),
+                  0,
+                  (hmmrhit.get("archScore") != null ? Integer
+                          .valueOf((String) hmmrhit.get("archScore")) : 0f),
                   "HMMER3"));
           addArchGroup(hitseq, arch);
           alipp.setScore(Double.valueOf("" + dhit.get("bitscore")));