/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
String altitle = "JNet prediction on " + seq.getName()
+ " using alignment from " + title;
- wsInfo
- .setProgressText("Job details for MSA based prediction ("
- + title
- + ") on sequence :\n>"
- + seq.getName()
- + "\n"
- + AlignSeq
- .extractGaps("-. ", seq.getSequenceAsString())
- + "\n");
+ wsInfo.setProgressText("Job details for MSA based prediction (" + title
+ + ") on sequence :\n>" + seq.getName() + "\n"
+ + AlignSeq.extractGaps("-. ", seq.getSequenceAsString()) + "\n");
SequenceI aln[] = new SequenceI[msf.length];
for (int i = 0, j = msf.length; i < j; i++)
{
{
wsInfo = setWebService();
}
- wsInfo
- .setProgressText("Job details for prediction on sequence :\n>"
- + seq.getName()
- + "\n"
- + AlignSeq
- .extractGaps("-. ", seq.getSequenceAsString())
- + "\n");
+ wsInfo.setProgressText("Job details for prediction on sequence :\n>"
+ + seq.getName() + "\n"
+ + AlignSeq.extractGaps("-. ", seq.getSequenceAsString()) + "\n");
String altitle = "JNet prediction for sequence " + seq.getName()
+ " from " + title;
if (msa.getSequences().length == 1)
{
// Single Sequence prediction
- new jalview.ws.jws1.JPredClient(sh, af.getTitle(), false, msa, af,
- true);
+ new jalview.ws.jws1.JPredClient(sh, af.getTitle(), false, msa,
+ af, true);
}
else
{
if (msa.getSequences().length > 1)
{
// Sequence profile based prediction
- new jalview.ws.jws1.JPredClient(sh, af.getTitle(), true, msa, af,
- true);
+ new jalview.ws.jws1.JPredClient(sh, af.getTitle(), true, msa,
+ af, true);
}
}
}