import jalview.io.IdentifyFile;
import jalview.io.JPredFile;
import jalview.io.JnetAnnotationMaker;
+import jalview.io.PileUpfile;
import jalview.util.Comparison;
import jalview.util.MessageManager;
import jalview.ws.AWsJob;
if (msf.length > 1)
{
msa = new vamsas.objects.simple.Msfalignment();
- jalview.io.PileUpfile pileup = new jalview.io.PileUpfile();
+ PileUpfile pileup = new PileUpfile();
msa.setMsf(pileup.print(msf));
}
}