/**
* grouping for any annotation rows created
*/
- int graphGroup = 1, iGraphGroup = 1;
+ int graphGroup = 1;
if (alignViewport.getAlignment().getAlignmentAnnotation() != null)
{
for (AlignmentAnnotation ala : alignViewport.getAlignment()
AlignmentAnnotation annot = createAnnotationRowsForScores(
ourAnnot, service.serviceType + " (" + scr.getMethod()
+ ")", service.getServiceTypeURI()+"/"+ scr.getMethod(), aseq,
- base, scr);
+ base+1, scr);
annot.graph = AlignmentAnnotation.LINE_GRAPH;
annot.visible = (annotTypeMap==null || annotTypeMap.get(scr.getMethod())==null || annotTypeMap.get(scr.getMethod()).get(INVISIBLE) == null);
double[] thrsh=(annotTypeMap==null || annotTypeMap.get(scr.getMethod())==null) ? null : (double[]) annotTypeMap.get(scr.getMethod()).get(THRESHOLD);