import jalview.datamodel.SequenceI;
import jalview.gui.AlignFrame;
import jalview.gui.IProgressIndicator;
+import jalview.gui.IProgressIndicatorHandler;
import jalview.schemes.ResidueProperties;
import jalview.workers.AlignCalcWorker;
import jalview.ws.jws2.dm.AAConSettings;
progressId = System.currentTimeMillis());
}
rslt = submitToService(seqs);
+ if (guiProgress != null)
+ {
+ guiProgress.registerHandler(progressId,
+ new IProgressIndicatorHandler()
+ {
+ @Override
+ public boolean cancelActivity(long id)
+ {
+ cancelCurrentJob();
+ return true;
+ }
+
+ @Override
+ public boolean canCancel()
+ {
+ return true;
+ }
+ });
+ }
boolean finished = false;
long rpos = 0;
do
jalview.bin.Cache.log.debug("Updating result annotation from Job "
+ rslt + " at " + service.getUri());
updateResultAnnotation(true);
+ ap.sortAnnotations();
ap.adjustAnnotationHeight();
}
}
{
guiProgress.setProgressBar("", progressId);
}
- ap.paintAlignment(true);
+ // TODO: may not need to paintAlignment again !
+ ap.paintAlignment(false, false);
}
if (msg.length() > 0)
{
protected boolean checkDone()
{
calcMan.notifyStart(this);
- ap.paintAlignment(false);
+ ap.paintAlignment(false, false);
while (!calcMan.notifyWorking(this))
{
if (calcMan.isWorking(this))
{
if (ap != null)
{
- ap.paintAlignment(false);
+ ap.paintAlignment(false, false);
}
Thread.sleep(200);