*/
package jalview.ws.jws2;
+import jalview.util.MessageManager;
+import jalview.ws.jws2.dm.JabaOption;
+import jalview.ws.jws2.dm.JabaParameter;
+import jalview.ws.jws2.dm.JabaWsParamSet;
+import jalview.ws.jws2.jabaws2.Jws2Instance;
+import jalview.ws.params.ArgumentI;
+import jalview.ws.params.ParamDatastoreI;
+import jalview.ws.params.ParamManager;
+import jalview.ws.params.WsParamSetI;
+
import java.io.IOException;
import java.util.ArrayList;
import java.util.Arrays;
import compbio.metadata.PresetManager;
import compbio.metadata.RunnerConfig;
-import jalview.util.MessageManager;
-import jalview.ws.jws2.dm.JabaOption;
-import jalview.ws.jws2.dm.JabaParameter;
-import jalview.ws.jws2.dm.JabaWsParamSet;
-import jalview.ws.jws2.jabaws2.Jws2Instance;
-import jalview.ws.params.ArgumentI;
-import jalview.ws.params.ParamDatastoreI;
-import jalview.ws.params.ParamManager;
-import jalview.ws.params.WsParamSetI;
-
public class JabaParamStore implements ParamDatastoreI
{
}
else
{
- System.err
- .println("Warning: Ignoring parameter set instance of type "
+ System.err.println(
+ "Warning: Ignoring parameter set instance of type "
+ paramset.getClass()
+ " : Bound but not applicable for service at "
+ service.getUri());
}
if (narg == null)
{
- throw new Error(MessageManager.formatMessage("error.implementation_error_cannot_handle_jaba_param", new String[]{rg.getClass().toString()}));
+ throw new Error(MessageManager.formatMessage(
+ "error.implementation_error_cannot_handle_jaba_param",
+ new String[]
+ { rg.getClass().toString() }));
}
else
{
List rgs = new ArrayList();
for (ArgumentI rg : jwsargs)
{
- Argument narg = (rg instanceof JabaOption) ? ((JabaOption) rg)
- .getOption() : null;
+ Argument narg = (rg instanceof JabaOption)
+ ? ((JabaOption) rg).getOption()
+ : null;
if (narg == null)
{
- throw new Error(MessageManager.formatMessage("error.implementation_error_cannot_handle_jaba_param", new String[]{rg.getClass().toString()}));
+ throw new Error(MessageManager.formatMessage(
+ "error.implementation_error_cannot_handle_jaba_param",
+ new String[]
+ { rg.getClass().toString() }));
}
else
{
@Override
public boolean presetExists(String name)
{
- return (editedParams.containsKey(name) || servicePresets
- .containsKey(name));
+ return (editedParams.containsKey(name)
+ || servicePresets.containsKey(name));
}
@Override
}
if (servicePresets.containsKey(name))
{
- throw new Error(MessageManager.getString("error.implementation_error_attempt_to_delete_service_preset"));
+ throw new Error(MessageManager.getString(
+ "error.implementation_error_attempt_to_delete_service_preset"));
}
}
List<ArgumentI> jobParams)
{
JabaWsParamSet jps = new JabaWsParamSet(presetName, text, jobParams);
- jps.setApplicableUrls(new String[]
- { service.getUri() });
+ jps.setApplicableUrls(new String[] { service.getUri() });
editedParams.put(jps.getName(), jps);
if (manager != null)
{
public void updatePreset(String oldName, String presetName, String text,
List<ArgumentI> jobParams)
{
- JabaWsParamSet jps = (JabaWsParamSet) ((oldName != null) ? getPreset(oldName)
+ JabaWsParamSet jps = (JabaWsParamSet) ((oldName != null)
+ ? getPreset(oldName)
: getPreset(presetName));
if (jps == null)
{
- throw new Error(MessageManager.formatMessage("error.implementation_error_cannot_locate_oldname_presetname", new String[]{oldName,presetName}));
+ throw new Error(MessageManager.formatMessage(
+ "error.implementation_error_cannot_locate_oldname_presetname",
+ new String[]
+ { oldName, presetName }));
}
jps.setName(presetName);
jps.setDescription(text);
jps.setArguments(jobParams);
- jps.setApplicableUrls(new String[]
- { service.getUri() });
+ jps.setApplicableUrls(new String[] { service.getUri() });
if (oldName != null && !oldName.equals(jps.getName()))
{
editedParams.remove(oldName);
{
if (!involves(urls))
{
- throw new IOException(MessageManager.getString("error.implementation_error_cannot_find_service_url_in_given_set"));
+ throw new IOException(MessageManager.getString(
+ "error.implementation_error_cannot_find_service_url_in_given_set"));
}
JabaWsParamSet wsp = new JabaWsParamSet();
{
lines.add(st.nextToken());
}
- wsp.setjabaArguments(ParameterUtils.processParameters(lines,
- serviceOptions, " "));
+ wsp.setjabaArguments(
+ ParameterUtils.processParameters(lines, serviceOptions, " "));
return wsp;
}
{
if (!involves(pset.getApplicableUrls()))
{
- throw new IOException(MessageManager.formatMessage("error.implementation_error_cannot_find_service_url_in_given_set_param_store", new String[]{service.getUri()}));
+ throw new IOException(MessageManager.formatMessage(
+ "error.implementation_error_cannot_find_service_url_in_given_set_param_store",
+ new String[]
+ { service.getUri() }));
}
if (!(pset instanceof JabaWsParamSet))
{
- throw new Error(MessageManager.getString("error.implementation_error_jabaws_param_set_only_handled_by"));
+ throw new Error(MessageManager.getString(
+ "error.implementation_error_jabaws_param_set_only_handled_by"));
}
StringBuffer rslt = new StringBuffer();