JAL-1807 explicit imports (jalview.ws.*)

[jalview.git] / src / jalview / ws / jws2 / JabaParamStore.java

diff --git a/src/jalview/ws/jws2/JabaParamStore.java b/src/jalview/ws/jws2/JabaParamStore.java
index 65f939a..81069d6 100644 (file)
--- a/src/jalview/ws/jws2/JabaParamStore.java
+++ b/src/jalview/ws/jws2/JabaParamStore.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,6 +20,17 @@
  */
 package jalview.ws.jws2;
 
+import jalview.util.MessageManager;
+import jalview.util.QuickSort;
+import jalview.ws.jws2.dm.JabaOption;
+import jalview.ws.jws2.dm.JabaParameter;
+import jalview.ws.jws2.dm.JabaWsParamSet;
+import jalview.ws.jws2.jabaws2.Jws2Instance;
+import jalview.ws.params.ArgumentI;
+import jalview.ws.params.ParamDatastoreI;
+import jalview.ws.params.ParamManager;
+import jalview.ws.params.WsParamSetI;
+
 import java.io.IOException;
 import java.util.ArrayList;
 import java.util.Arrays;
@@ -27,7 +38,6 @@ import java.util.Hashtable;
 import java.util.List;
 import java.util.StringTokenizer;
 
-import org.jmol.util.ArrayUtil;
 import compbio.metadata.Argument;
 import compbio.metadata.Option;
 import compbio.metadata.Parameter;
@@ -35,15 +45,6 @@ import compbio.metadata.Preset;
 import compbio.metadata.PresetManager;
 import compbio.metadata.RunnerConfig;
 
-import jalview.ws.jws2.dm.JabaOption;
-import jalview.ws.jws2.dm.JabaParameter;
-import jalview.ws.jws2.dm.JabaWsParamSet;
-import jalview.ws.jws2.jabaws2.Jws2Instance;
-import jalview.ws.params.ArgumentI;
-import jalview.ws.params.ParamDatastoreI;
-import jalview.ws.params.ParamManager;
-import jalview.ws.params.WsParamSetI;
-
 public class JabaParamStore implements ParamDatastoreI
 {
 
@@ -166,9 +167,7 @@ public class JabaParamStore implements ParamDatastoreI
       }
       if (narg == null)
       {
-        throw new Error(
-                "Implementation Error: Cannot handle Jaba parameter object "
-                        + rg.getClass());
+        throw new Error(MessageManager.formatMessage("error.implementation_error_cannot_handle_jaba_param", new String[]{rg.getClass().toString()}));
       }
       else
       {
@@ -182,7 +181,7 @@ public class JabaParamStore implements ParamDatastoreI
     }
     ArgumentI[] rgssort = rgs.toArray(new ArgumentI[rgs.size()]);
     String[] rgssorton = rgnames.toArray(new String[rgs.size()]);
-    jalview.util.QuickSort.sort(rgssorton, rgssort);
+    QuickSort.sort(rgssorton, rgssort);
     ArgumentI tmp1;
     int i = 0;
     while (rgssort.length - i > i)
@@ -203,9 +202,7 @@ public class JabaParamStore implements ParamDatastoreI
               .getOption() : null;
       if (narg == null)
       {
-        throw new Error(
-                "Implementation Error: Cannot handle Jaba parameter object "
-                        + rg.getClass());
+          throw new Error(MessageManager.formatMessage("error.implementation_error_cannot_handle_jaba_param", new String[]{rg.getClass().toString()}));
       }
       else
       {
@@ -243,8 +240,7 @@ public class JabaParamStore implements ParamDatastoreI
     }
     if (servicePresets.containsKey(name))
     {
-      throw new Error(
-              "Implementation error: Attempt to delete a service preset!");
+      throw new Error(MessageManager.getString("error.implementation_error_attempt_to_delete_service_preset"));
     }
   }
 
@@ -270,9 +266,7 @@ public class JabaParamStore implements ParamDatastoreI
             : getPreset(presetName));
     if (jps == null)
     {
-      throw new Error("Implementation error: Can't locate either oldname ("
-              + oldName + ") or presetName (" + presetName
-              + "in the datastore!");
+      throw new Error(MessageManager.formatMessage("error.implementation_error_cannot_locate_oldname_presetname", new String[]{oldName,presetName}));
     }
     jps.setName(presetName);
     jps.setDescription(text);
@@ -322,8 +316,7 @@ public class JabaParamStore implements ParamDatastoreI
   {
     if (!involves(urls))
     {
-      throw new IOException(
-              "Implementation error: Cannot find service url in the given url set!");
+      throw new IOException(MessageManager.getString("error.implementation_error_cannot_find_service_url_in_given_set"));
 
     }
     JabaWsParamSet wsp = new JabaWsParamSet();
@@ -348,15 +341,11 @@ public class JabaParamStore implements ParamDatastoreI
   {
     if (!involves(pset.getApplicableUrls()))
     {
-      throw new IOException(
-              "Implementation error: Cannot find service url in the given url set for this service parameter store ("
-                      + service.getUri() + ") !");
-
+      throw new IOException(MessageManager.formatMessage("error.implementation_error_cannot_find_service_url_in_given_set_param_store", new String[]{service.getUri()}));
     }
     if (!(pset instanceof JabaWsParamSet))
     {
-      throw new Error(
-              "Implementation error: JabaWsParamSets can only be handled by JabaParamStore");
+      throw new Error(MessageManager.getString("error.implementation_error_jabaws_param_set_only_handled_by"));
     }
 
     StringBuffer rslt = new StringBuffer();