rslt = aaservice.customAnalize(seqs, getJabaArguments());
} catch (WrongParameterException x)
{
- throw new JobSubmissionException(MessageManager.getString("exception.jobsubmission_invalid_params_set"), x);
+ throw new JobSubmissionException(MessageManager.getString(
+ "exception.jobsubmission_invalid_params_set"), x);
}
}
List<AlignmentAnnotation> ourAnnot, String typeName,
String calcId, SequenceI dseq, int base, Score scr)
{
- System.out.println("Creating annotation on dseq:" + dseq.getStart()
- + " base is " + base + " and length=" + dseq.getLength()
- + " == " + scr.getScores().size());
+ jalview.bin.Console.outPrintln("Creating annotation on dseq:"
+ + dseq.getStart() + " base is " + base + " and length="
+ + dseq.getLength() + " == " + scr.getScores().size());
// AlignmentAnnotation annotation = new AlignmentAnnotation(
// scr.getMethod(), typeName, new Annotation[]
// {}, 0, -1, AlignmentAnnotation.LINE_GRAPH);