JAL-629 Change all stdout and stderr output to use Console.outPrintln and Console...

[jalview.git] / src / jalview / ws / jws2 / JabawsCalcWorker.java

diff --git a/src/jalview/ws/jws2/JabawsCalcWorker.java b/src/jalview/ws/jws2/JabawsCalcWorker.java
index 484eae6..47e82de 100644 (file)
--- a/src/jalview/ws/jws2/JabawsCalcWorker.java
+++ b/src/jalview/ws/jws2/JabawsCalcWorker.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -115,10 +115,8 @@ public abstract class JabawsCalcWorker extends AbstractJabaCalcWorker
         rslt = aaservice.customAnalize(seqs, getJabaArguments());
       } catch (WrongParameterException x)
       {
-        throw new JobSubmissionException(
-                MessageManager
-                        .getString("exception.jobsubmission_invalid_params_set"),
-                x);
+        throw new JobSubmissionException(MessageManager.getString(
+                "exception.jobsubmission_invalid_params_set"), x);
 
       }
     }
@@ -144,7 +142,7 @@ public abstract class JabawsCalcWorker extends AbstractJabaCalcWorker
           List<AlignmentAnnotation> ourAnnot, String typeName,
           String calcId, SequenceI dseq, int base, Score scr)
   {
-    System.out.println("Creating annotation on dseq:" + dseq.getStart()
+    jalview.bin.Console.outPrintln("Creating annotation on dseq:" + dseq.getStart()
             + " base is " + base + " and length=" + dseq.getLength()
             + " == " + scr.getScores().size());
     // AlignmentAnnotation annotation = new AlignmentAnnotation(